To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("seqc")
In most cases, you don't need to download the package archive at all.
seqc
|
This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see seqc.
RNA-seq data generated from SEQC (MAQC-III) study
Bioconductor version: 3.0
The SEQC/MAQC-III Consortium has produced benchmark RNA-seq data for the assessment of RNA sequencing technologies and data analysis methods (Nat Biotechnol, 2014). Billions of sequence reads have been generated from ten different sequencing sites. This package contains the summarized read count data for ~2000 sequencing libraries. It also includes all the exon-exon junctions discovered from the study. TaqMan RT-PCR data for ~1000 genes and ERCC spike-in sequence data are included in this package as well.
Author: Yang Liao and Wei Shi
Maintainer: Yang Liao <liao at wehi.edu.au> and Wei Shi <shi at wehi.edu.au>
Citation (from within R,
enter citation("seqc")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("seqc")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("seqc")
| R Script | SEQC Vignette | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | ExperimentData, ExpressionData, GeneExpression, HighThroughputSequencingData, RNAExpressionData, RNASeq, RNAseqData, Sequencing |
| Version | 1.0.0 |
| License | GPL-3 |
| Depends | R (>= 2.10) |
| Imports | |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | http://bioconductor.org/packages/release/data/experiment/html/seqc.html |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | seqc_1.0.0.tar.gz |
| Windows Binary | seqc_1.0.0.zip |
| Mac OS X 10.6 (Snow Leopard) | seqc_1.0.0.tgz |
| Mac OS X 10.9 (Mavericks) | seqc_1.0.0.tgz |
| Subversion source | (username/password: readonly) |
| Package Short Url | http://bioconductor.org/packages/seqc/ |
| Package Downloads Report | Download Stats |
Documentation »
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