- Home
- Bioconductor 3.0
- Experiment Packages
- NGScopyData
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("NGScopyData")
In most cases, you don't need to download the package archive at all.
NGScopyData
|
This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see NGScopyData.
Subset of BAM files of human tumor and pooled normal sequencing data (Zhao et al. 2014) for the NGScopy package
Bioconductor version: 3.0
Subset of BAM files of human lung tumor and pooled normal samples by targeted panel sequencing. [Zhao et al 2014. Targeted Sequencing in Non-Small Cell Lung Cancer (NSCLC) Using the University of North Carolina (UNC) Sequencing Assay Captures Most Previously Described Genetic Aberrations in NSCLC. In preparation.] Each sample is a 10 percent random subsample drawn from the original sequencing data. The pooled normal sample has been rescaled accroding to the total number of normal samples in the "pool". Here provided is the subsampled data on chr6 (hg19).
Author: Xiaobei Zhao [aut, cre, cph]
Maintainer: Xiaobei Zhao <xiaobei at binf.ku.dk>
Citation (from within R,
enter citation("NGScopyData")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("NGScopyData")
Documentation
| Reference Manual |
Details
| biocViews | DNASeq, ExperimentData, Sequencing, TargetedResequencing |
| Version | 0.99.2 |
| License | GPL (>=2) |
| Depends | |
| Imports | |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | http://www.bioconductor.org/packages/release/data/experiment/html/NGScopyData.html |
| Depends On Me | |
| Imports Me | |
| Suggests Me | NGScopy |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | NGScopyData_0.99.2.tar.gz |
| Windows Binary | NGScopyData_0.99.2.zip |
| Mac OS X 10.6 (Snow Leopard) | NGScopyData_0.99.2.tgz |
| Mac OS X 10.9 (Mavericks) | NGScopyData_0.99.2.tgz |
| Subversion source | (username/password: readonly) |
| Package Short Url | http://bioconductor.org/packages/NGScopyData/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
