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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("HiCDataLymphoblast")
In most cases, you don't need to download the package archive at all.
HiCDataLymphoblast
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This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see HiCDataLymphoblast.
Human lymphoblastoid HiC data from Lieberman-Aiden et al. 2009
Bioconductor version: 3.0
The HiC data from human lymphoblastoid cell line (HindIII restriction) was retrieved from the sequence read archive and two ends of the paired reads were aligned separately with bowtie.
Author: Borbala Mifsud
Maintainer: Borbala Mifsud <Borbala.Mifsud at cancer.org.uk>
Citation (from within R,
enter citation("HiCDataLymphoblast")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("HiCDataLymphoblast")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("HiCDataLymphoblast")
| package_vignettes.pdf | ||
| Reference Manual |
Details
| biocViews | ExperimentData, HighThroughputSequencingData |
| Version | 1.1.1 |
| License | GPL-3 |
| Depends | |
| Imports | |
| LinkingTo | |
| Suggests | GOTHiC, ShortRead |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | GOTHiC |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | HiCDataLymphoblast_1.1.1.tar.gz |
| Windows Binary | HiCDataLymphoblast_1.1.1.zip |
| Mac OS X 10.6 (Snow Leopard) | HiCDataLymphoblast_1.1.1.tgz |
| Mac OS X 10.9 (Mavericks) | HiCDataLymphoblast_1.1.1.tgz |
| Subversion source | (username/password: readonly) |
| Package Short Url | http://bioconductor.org/packages/HiCDataLymphoblast/ |
| Package Downloads Report | Download Stats |
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