To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("vtpnet")

In most cases, you don't need to download the package archive at all.

vtpnet

This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see vtpnet.

variant-transcription factor-phenotype networks

Bioconductor version: 3.0

variant-transcription factor-phenotype networks, inspired by Maurano et al., Science (2012), PMID 22955828

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("vtpnet")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("vtpnet")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("vtpnet")

PDF	R Script	vtpnet: variant-transcription factor-network tools
PDF		Reference Manual

biocViews	Network, Software
Version	0.6.0
In Bioconductor since	BioC 2.13 (R-3.0) (2.5 years)
License	Artistic-2.0
Depends	R (>= 3.0.0), graph, GenomicRanges, gwascat, doParallel, foreach
Imports
LinkingTo
Suggests	MotifDb, VariantAnnotation, Rgraphviz
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	vtpnet_0.6.0.tar.gz
Windows Binary	vtpnet_0.6.0.zip
Mac OS X 10.6 (Snow Leopard)	vtpnet_0.6.0.tgz
Mac OS X 10.9 (Mavericks)	vtpnet_0.6.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/vtpnet/tree/release-3.0
Package Short Url	http://bioconductor.org/packages/vtpnet/
Package Downloads Report	Download Stats

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