To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RankProd")

In most cases, you don't need to download the package archive at all.

RankProd

This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see RankProd.

Rank Product method for identifying differentially expressed genes with application in meta-analysis

Bioconductor version: 3.0

Non-parametric method for identifying differentially expressed (up- or down- regulated) genes based on the estimated percentage of false predictions (pfp). The method can combine data sets from different origins (meta-analysis) to increase the power of the identification.

Author: Fangxin Hong <fxhong at jimmy.harvard.edu> and Ben Wittner <Wittner.Ben at mgh.harvard.edu> with contribution from Rainer Breitling <r.breitling at bio.gla.ac.uk>, Colin Smith <colin at colinsmith.org>, and Florian Battke <battke at informatik.uni-tuebingen.de>

Maintainer: Fangxin Hong <fxhong at jimmy.harvard.edu>

Citation (from within R, enter citation("RankProd")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RankProd")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RankProd")

PDF	R Script	RankProd Tutorial
PDF		Reference Manual
Text		LICENSE

Details

biocViews	DifferentialExpression, Software
Version	2.38.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier (> 11 years)
License	file LICENSE
Depends	R (>= 1.9.0)
Imports	graphics
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me	RNAither, tRanslatome
Imports Me	HTSanalyzeR
Suggests Me	oneChannelGUI
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	RankProd_2.38.0.tar.gz
Windows Binary	RankProd_2.38.0.zip
Mac OS X 10.6 (Snow Leopard)	RankProd_2.38.0.tgz
Mac OS X 10.9 (Mavericks)	RankProd_2.38.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/RankProd/tree/release-3.0
Package Short Url	http://bioconductor.org/packages/RankProd/
Package Downloads Report	Download Stats

Documentation »

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