- Home
- Bioconductor 2.9
- Software Packages
- ChromHeatMap
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ChromHeatMap")
In most cases, you don't need to download the package archive at all.
ChromHeatMap
|
This package is for version 2.9 of Bioconductor; for the stable, up-to-date release version, see ChromHeatMap.
Heat map plotting by genome coordinate
Bioconductor version: 2.9
The ChromHeatMap package can be used to plot genome-wide data (e.g. expression, CGH, SNP) along each strand of a given chromosome as a heat map. The generated heat map can be used to interactively identify probes and genes of interest.
Author: Tim F. Rayner
Maintainer: Tim F. Rayner <tfrayner at gmail.com>
Citation (from within R,
enter citation("ChromHeatMap")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ChromHeatMap")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ChromHeatMap")
| ChromHeatMap.pdf | ||
| Reference Manual |
Details
| biocViews | Software, Visualization |
| Version | 1.8.0 |
| In Bioconductor since | BioC 2.5 (R-2.10) (6.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.9.0), annotate(>= 1.20.0), AnnotationDbi(>= 1.4.0), hgu95av2.db |
| Imports | annotate, AnnotationDbi, Biobase, graphics, grDevices, methods, stats, IRanges, rtracklayer |
| LinkingTo | |
| Suggests | ALL |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | ChromHeatMap_1.8.0.tar.gz |
| Windows Binary | ChromHeatMap_1.8.0.zip |
| Mac OS X 10.6 (Snow Leopard) | |
| Mac OS X 10.9 (Mavericks) | |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/ChromHeatMap/tree/release-2.9 |
| Package Short Url | http://bioconductor.org/packages/ChromHeatMap/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
