To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("yaqcaffy")

In most cases, you don't need to download the package archive at all.

yaqcaffy

This package is for version 2.8 of Bioconductor; for the stable, up-to-date release version, see yaqcaffy.

Affymetrix expression data quality control and reproducibility analysis

Bioconductor version: 2.8

Quality control of Affymetrix GeneChip expression data and reproducibility analysis of human whole genome chips with the MAQC reference datasets.

Author: Laurent Gatto

Maintainer: Laurent Gatto <laurent.gatto at gmail.com>

Citation (from within R, enter citation("yaqcaffy")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("yaqcaffy")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("yaqcaffy")

PDF		yaqcaffy.pdf
PDF		Reference Manual

biocViews	Microarray, OneChannel, QualityControl, ReportWriting, Software
Version	1.12.0
In Bioconductor since	BioC 2.2 (R-2.7) (8 years)
License	Artistic-2.0
Depends	simpleaffy(>= 2.19.3), methods
Imports
LinkingTo
Suggests	MAQCsubsetAFX, affydata, xtable, tcltk2, tcltk
SystemRequirements
Enhances
URL	http://sites.google.com/site/laurentgatto/r-bioconductor/yaqcaffy
Depends On Me
Imports Me
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	yaqcaffy_1.12.0.tar.gz
Windows Binary	yaqcaffy_1.12.0.zip
Mac OS X 10.6 (Snow Leopard)
Mac OS X 10.9 (Mavericks)
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/yaqcaffy/tree/release-2.8
Package Short Url	http://bioconductor.org/packages/yaqcaffy/
Package Downloads Report	Download Stats

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