To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("nudge")

In most cases, you don't need to download the package archive at all.

nudge

This package is for version 2.8 of Bioconductor; for the stable, up-to-date release version, see nudge.

Normal Uniform Differential Gene Expression detection

Bioconductor version: 2.8

Package for normalizing microarray data in single and multiple replicate experiments and fitting a normal-uniform mixture to detect differentially expressed genes in the cases where the two samples are being compared directly or indirectly (via a common reference sample)

Author: N. Dean <nemad at stat.washington.edu> and A. E. Raftery <raftery at stat.washington.edu>

Maintainer: N. Dean <nemad at stat.washington.edu>

Citation (from within R, enter citation("nudge")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("nudge")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("nudge")

PDF		nudge.vignette.pdf
PDF		nvignplot1.pdf
PDF		nvignplot2.pdf
PDF		nvignplot3.pdf
PDF		nvignplot4.pdf
PDF		Reference Manual

Details

biocViews	DifferentialExpression, Microarray, Software, TwoChannel
Version	1.18.0
In Bioconductor since	BioC 1.8 (R-2.3) (10 years)
License	GPL-2
Depends
Imports	stats
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	nudge_1.18.0.tar.gz
Windows Binary	nudge_1.18.0.zip
Mac OS X 10.6 (Snow Leopard)
Mac OS X 10.9 (Mavericks)
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/nudge/tree/release-2.8
Package Short Url	http://bioconductor.org/packages/nudge/
Package Downloads Report	Download Stats