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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("keggorthology")
In most cases, you don't need to download the package archive at all.
keggorthology
|
This package is for version 2.8 of Bioconductor; for the stable, up-to-date release version, see keggorthology.
graph support for KO, KEGG Orthology
Bioconductor version: 2.8
graphical representation of the Feb 2010 KEGG Orthology. The KEGG orthology is a set of pathway IDs that are not to be confused with the KEGG ortholog IDs.
Author: VJ Carey <stvjc at channing.harvard.edu>
Maintainer: VJ Carey <stvjc at channing.harvard.edu>
Citation (from within R,
enter citation("keggorthology")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("keggorthology")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("keggorthology")
| keggorth.pdf | ||
| Reference Manual |
Details
| biocViews | GraphsAndNetworks, Pathways, Software |
| Version | 2.4.0 |
| In Bioconductor since | BioC 2.6 (R-2.11) (6 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.5.0), stats, graph, hgu95av2.db |
| Imports | AnnotationDbi, graph, DBI, graph, grDevices, methods, stats, tools, utils |
| LinkingTo | |
| Suggests | RBGL, ALL |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | gene2pathway |
| Imports Me | |
| Suggests Me | MLInterfaces |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | keggorthology_2.4.0.tar.gz |
| Windows Binary | keggorthology_2.4.0.zip |
| Mac OS X 10.6 (Snow Leopard) | |
| Mac OS X 10.9 (Mavericks) | |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/keggorthology/tree/release-2.8 |
| Package Short Url | http://bioconductor.org/packages/keggorthology/ |
| Package Downloads Report | Download Stats |
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