To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GraphAlignment")

In most cases, you don't need to download the package archive at all.

GraphAlignment

This package is for version 2.8 of Bioconductor; for the stable, up-to-date release version, see GraphAlignment.

GraphAlignment

Bioconductor version: 2.8

Graph alignment is an extension package for the R programming environment which provides functions for finding an alignment between two networks based on link and node similarity scores. (J. Berg and M. Laessig, "Cross-species analysis of biological networks by Bayesian alignment", PNAS 103 (29), 10967-10972 (2006))

Author: Joern P. Meier <mail at ionflux.org>, Michal Kolar, Ville Mustonen, Michael Laessig, and Johannes Berg.

Maintainer: Joern P. Meier <mail at ionflux.org>

Citation (from within R, enter citation("GraphAlignment")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GraphAlignment")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GraphAlignment")

PDF		a.pdf
PDF		align_principle2b1.pdf
PDF		align_principle2c1.pdf
PDF		align_principle_short1.pdf
PDF		binning-01a.pdf
PDF		GraphAlignment.pdf
PDF		Reference Manual

Details

biocViews	GraphsAndNetworks, Software
Version	1.14.0
In Bioconductor since	BioC 2.2 (R-2.7) (8 years)
License	file LICENSE
Depends
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL	http://www.thp.uni-koeln.de/~berg/GraphAlignment/
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	GraphAlignment_1.14.0.tar.gz
Windows Binary	GraphAlignment_1.14.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)
Mac OS X 10.9 (Mavericks)
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/GraphAlignment/tree/release-2.8
Package Short Url	http://bioconductor.org/packages/GraphAlignment/
Package Downloads Report	Download Stats