targetscan.Hs.eg.db

TargetScan miRNA target predictions for human

Bioconductor version: 2.7

TargetScan miRNA target predictions for human assembled using data from the TargetScan website. TargetScan predicts biological targets of miRNAs by searching for the presence of conserved 8mer and 7mer sites that match the seed region of each miRNA. Also identified are sites with mismatches in the seed region that are compensated by conserved 3' pairing. In mammals, predictions are ranked based on the predicted efficacy of targeting as calculated using the context scores of the sites.

Author: Gabor Csardi <Gabor.Csardi at unil.ch>

Maintainer: James F. Reid <james.reid at ifom-ieo-campus.it>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("targetscan.Hs.eg.db")

To cite this package in a publication, start R and enter:

    citation("targetscan.Hs.eg.db")

Documentation


PDF		Reference Manual

Details

biocViews	AnnotationData, FunctionalAnnotation
Depends	R (>= 2.7.0), methods, AnnotationDbi(>= 1.11.8)
Imports	methods, AnnotationDbi
Suggests
System Requirements
License	file LICENSE
URL
Depends On Me
Imports Me
Suggests Me
Version	0.2.0

Package Downloads

Package Source	targetscan.Hs.eg.db_0.2.0.tar.gz
Windows Binary	targetscan.Hs.eg.db_0.2.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	targetscan.Hs.eg.db_0.2.0.tgz
Package Downloads Report	Download Stats

Workflows »

Common Bioconductor workflows include:

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Hosting provided by Fred Hutchinson Cancer Research Center