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domainsignatures
Geneset enrichment based on InterPro domain signatures
Bioconductor version: 2.7
Find significantly enriched gene classifications in a list of functionally undescribed genes based on their InterPro domain structure.
Author: Florian Hahne, Tim Beissbarth
Maintainer: Florian Hahne <florian.hahne at novartis.com>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("domainsignatures")
To cite this package in a publication, start R and enter:
citation("domainsignatures")
Documentation
| R Script | Gene set enrichment using InterPro domain signatures | |
| Reference Manual |
Details
| biocViews | Bioinformatics, Annotation, Pathways |
| Depends | R (>= 2.4.0), KEGG.db, prada, biomaRt, methods |
| Imports | AnnotationDbi |
| Suggests | |
| System Requirements | |
| License | Artistic-2.0 |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Version | 1.10.0 |
| Since | Bioconductor 2.3 (R-2.8) |
Package Downloads
| Package Source | domainsignatures_1.10.0.tar.gz |
| Windows Binary | domainsignatures_1.10.0.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) binary | domainsignatures_1.10.0.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Annotation
- Variants
- Flow Cytometry and other assays
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