arrayQualityMetrics

Quality metrics on microarray data sets

Bioconductor version: 2.7

This package generates a quality metrics report on ExpressionSet, NChannelSet, AffyBatch or BeadLevelList objects containing microarray data with one or two channels.

Author: Audrey Kauffmann, Wolfgang Huber

Maintainer: Audrey Kauffmann <kauffmann at bergonie.org>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("arrayQualityMetrics")

To cite this package in a publication, start R and enter:

    citation("arrayQualityMetrics")

Documentation

PDF	R Script	arrayQualityMetrics modules
PDF	R Script	Quality assessment with arrayQualityMetrics
PDF		Reference Manual

Details

biocViews	Microarray, QualityControl, OneChannel, TwoChannel, ReportWriting
Depends	affyPLM, vsn
Imports	Biobase, RColorBrewer, affy, beadarray, genefilter, grDevices, graphics, hwriter, lattice, latticeExtra, limma, marray, methods, RJSONIO, simpleaffy, stats, stats4, SVGAnnotation (>= 0.7.2), utils, XML
Suggests	ALLMLL, CCl4
System Requirements
License	LGPL (>= 2)
URL
Depends On Me
Imports Me
Suggests Me	ArrayExpress
Version	3.2.4
Since	Bioconductor 2.1 (R-2.6)

Package Downloads

Package Source	arrayQualityMetrics_3.2.4.tar.gz
Windows Binary	arrayQualityMetrics_3.2.4.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	arrayQualityMetrics_3.2.4.tgz
Package Downloads Report	Download Stats

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