SQUADD
Add-on of the SQUAD Software
Bioconductor version: 2.7
This package SQUADD is a SQUAD add-on. It permits to generate SQUAD simulation matrix, prediction Heat-Map and Correlation Circle from PCA analysis.
Author: Martial Sankar, supervised by Christian Hardtke and Ioannis Xenarios
Maintainer: Martial Sankar <martial.sankar at unil.ch>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("SQUADD")
To cite this package in a publication, start R and enter:
citation("SQUADD")
Documentation
| R Script | SQUADD package | |
| R Script | SQUADD package | |
| Reference Manual |
Details
| biocViews | GraphsAndNetworks, DataRepresentation |
| Depends | R (>= 2.11.0) |
| Imports | graphics, grDevices, methods, RColorBrewer, stats, utils |
| Suggests | |
| System Requirements | |
| License | GPL (>=2) |
| URL | http://www.unil.ch/dbmv/page21142_en.html |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Version | 1.0.0 |
| Since | Bioconductor 2.7 (R-2.12) |
Package Downloads
| Package Source | SQUADD_1.0.0.tar.gz |
| Windows Binary | SQUADD_1.0.0.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) binary | SQUADD_1.0.0.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Annotation
- Variants
- Flow Cytometry and other assays
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