Rolexa
Statistical analysis of Solexa sequencing data
Bioconductor version: 2.7
Provides probabilistic base calling, quality checks and diagnostic plots for Solexa sequencing data
Author: Jacques Rougemont, Arnaud Amzallag, Christian Iseli, Laurent Farinelli, Ioannis Xenarios, Felix Naef
Maintainer: Jacques Rougemont <jacques.rougemont at epfl.ch>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("Rolexa")
To cite this package in a publication, start R and enter:
citation("Rolexa")
Documentation
| R Script | Rolexa | |
| Reference Manual |
Details
| biocViews | Sequencing, DataImport, Preprocessing, QualityControl |
| Depends | R (>= 2.9.0), mclust, graphics, grDevices, methods, ShortRead |
| Imports | Biostrings, graphics, grDevices, IRanges, methods, ShortRead, stats |
| Suggests | |
| System Requirements | |
| License | GPL-2 |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Version | 1.6.0 |
| Since | Bioconductor 2.5 (R-2.10) |
Package Downloads
| Package Source | Rolexa_1.6.0.tar.gz |
| Windows Binary | Rolexa_1.6.0.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) binary | Rolexa_1.6.0.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Annotation
- Variants
- Flow Cytometry and other assays
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