Bioconductor Task View: Mus_musculus

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Package Maintainer Title
BSgenome.Mmusculus.UCSC.mm8 Biocore Team c/o BioC user list Mus musculus (Mouse) full genome (UCSC version mm8)
BSgenome.Mmusculus.UCSC.mm9 Biocore Team c/o BioC user list Mus musculus (Mouse) full genome (UCSC version mm9)
hom.Mm.inp.db Biocore Data Team Homology information for Mus musculus from Inparanoid
htmg430acdf Biocore Data Team htmg430acdf
htmg430aprobe Biocore Data Team Probe sequence data for microarrays of type htmg430a
htmg430bcdf Biocore Data Team htmg430bcdf
htmg430bprobe Biocore Data Team Probe sequence data for microarrays of type htmg430b
htmg430pmcdf Biocore Data Team htmg430pmcdf
htmg430pmprobe Biocore Data Team Probe sequence data for microarrays of type htmg430pm
illuminaMousev1.db Mark Dunning Illumina MouseWGv1 annotation data (chip illuminaMousev1)
illuminaMousev1BeadID.db Mark Dunning Illumina MouseWGv1 annotation data (chip illuminaMousev1BeadID)
illuminaMousev1p1.db Mark Dunning Illumina MouseWGv1.1 annotation data (chip illuminaMousev1p1)
illuminaMousev1p1BeadID.db Mark Dunning Illumina MouseWGv1.1 annotation data (chip illuminaMousev1p1BeadID)
illuminaMousev2.db Mark Dunning Illumina MouseWGv2 annotation data (chip illuminaMousev2)
illuminaMousev2BeadID.db Mark Dunning Illumina MouseWGv2 annotation data (chip illuminaMousev2BeadID)
lumiMouseAll.db Pan Du and Gang Feng Illumina Mouse Expression BeadChips (include all versions: version 1 to 2) annotation data (chip lumiMouseAll)
m10kcod.db Diego Diez GE CodeLink UniSet Mouse I Bioarray (~10 000 mouse gene targets) annotation data (chip m10kcod)
m20kcod.db Diego Diez GE CodeLink UniSet Mouse 20k I Bioarray annotation data (chip m20kcod)
mgu74a.db Biocore Data Team Affymetrix Murine Genome U74v2 annotation data (chip mgu74a)
mgu74acdf Biocore Data Team mgu74acdf
mgu74aprobe Biocore Data Team Probe sequence data for microarrays of type mgu74a
mgu74av2.db Biocore Data Team Affymetrix Murine Genome U74v2 annotation data (chip mgu74av2)
mgu74av2cdf Biocore Data Team mgu74av2cdf
mgu74av2probe Biocore Data Team Probe sequence data for microarrays of type mgu74av2
mgu74b.db Biocore Data Team Affymetrix Murine Genome U74v2 annotation data (chip mgu74b)
mgu74bcdf Biocore Data Team mgu74bcdf
mgu74bprobe Biocore Data Team Probe sequence data for microarrays of type mgu74b
mgu74bv2.db Biocore Data Team Affymetrix Murine Genome U74v2 annotation data (chip mgu74bv2)
mgu74bv2cdf Biocore Data Team mgu74bv2cdf
mgu74bv2probe Biocore Data Team Probe sequence data for microarrays of type mgu74bv2
mgu74c.db Biocore Data Team Affymetrix Murine Genome U74v2 annotation data (chip mgu74c)
mgu74ccdf Biocore Data Team mgu74ccdf
mgu74cprobe Biocore Data Team Probe sequence data for microarrays of type mgu74c
mgu74cv2.db Biocore Data Team Affymetrix Murine Genome U74v2 annotation data (chip mgu74cv2)
mgu74cv2cdf Biocore Data Team mgu74cv2cdf
mgu74cv2probe Biocore Data Team Probe sequence data for microarrays of type mgu74cv2
mguatlas5k.db Biocore Data Team Clontech BD Atlas Long Oligos Mouse 5K annotation data (chip mguatlas5k)
mgug4104a.db Biocore Data Team Agilent annotation data (chip mgug4104a)
mgug4120a.db Biocore Data Team Agilent annotation data (chip mgug4120a)
mgug4121a.db Biocore Data Team Agilent Mouse annotation data (chip mgug4121a)
mgug4122a.db Biocore Data Team Agilent "Mouse Genome, Whole" annotation data (chip mgug4122a)
mi16cod.db Diego Diez GE CodeLink Mouse Inflammation 16 Bioarray annotation data (chip mi16cod)
mm24kresogen.db Simon de Bernard RNG_MRC Mouse Pangenomic 24k Set annotation data (chip mm24kresogen)
MmAgilentDesign026655.db Biocore Data Team Agilent Chips that use Agilent design number 026655 annotation data (chip MmAgilentDesign026655)
moe430a.db Biocore Data Team Affymetrix Mouse Expression Set 430 annotation data (chip moe430a)
moe430acdf Biocore Data Team moe430acdf
moe430aprobe Biocore Data Team Probe sequence data for microarrays of type moe430a
moe430b.db Biocore Data Team Affymetrix Mouse Expression Set 430 annotation data (chip moe430b)
moe430bcdf Biocore Data Team moe430bcdf
moe430bprobe Biocore Data Team Probe sequence data for microarrays of type moe430b
mogene10stprobeset.db Li, Arthur Affymetrix Mouse Gene 1.0-ST Array Probeset Revision 6 annotation data (chip mogene10stprobeset)
mogene10sttranscriptcluster.db Li, Arthur Affymetrix Mouse Gene 1.0-ST Array Transcriptcluster Revision 6 annotation data (chip mogene10sttranscriptcluster)
mogene10stv1cdf Biocore Data Team mogene10stv1cdf
mogene10stv1probe Biocore Data Team Probe sequence data for microarrays of type mogene10stv1
mogene11stprobeset.db Li, Arthur Affymetrix Mouse Gene 1.1-ST Array Probeset annotation data (chip mogene11stprobeset)
mogene11sttranscriptcluster.db Li, Arthur Affymetrix Mouse Gene 1.1-ST Array Transcriptcluster annotation data (chip mogene11sttranscriptcluster)
mouse.db0 Biocore Data Team Base Level Annotation databases for mouse
mouse4302.db Biocore Data Team Affymetrix Mouse Genome 430 2.0 Array annotation data (chip mouse4302)
mouse4302cdf Biocore Data Team mouse4302cdf
mouse4302probe Biocore Data Team Probe sequence data for microarrays of type mouse4302
mouse430a2.db Biocore Data Team Affymetrix Mouse Genome 430A 2.0 Array annotation data (chip mouse430a2)
mouse430a2cdf Biocore Data Team mouse430a2cdf
mouse430a2probe Biocore Data Team Probe sequence data for microarrays of type mouse430a2
mouseCHRLOC Biocore Data Team A data package containing annotation data for mouseCHRLOC
mpedbarray.db Biocore Data Team FHCRC Nelson Lab mpedbarray Annotation Data (mpedbarray)
mu11ksuba.db Biocore Data Team Affymetrix Murine 11K Set annotation data (chip mu11ksuba)
mu11ksubacdf Biocore Data Team mu11ksubacdf
mu11ksubaprobe Biocore Data Team Probe sequence data for microarrays of type mu11ksuba
mu11ksubb.db Biocore Data Team Affymetrix Murine 11K Set annotation data (chip mu11ksubb)
mu11ksubbcdf Biocore Data Team mu11ksubbcdf
mu11ksubbprobe Biocore Data Team Probe sequence data for microarrays of type mu11ksubb
Mu15v1.db Biocore Data Team FHCRC Genomics Shared Resource Mu15v1 Annotation Data (Mu15v1)
mu19ksuba.db Biocore Data Team Affymetrix Murine Genome 19k Set annotation data (chip mu19ksuba)
mu19ksubacdf Biocore Data Team mu19ksubacdf
mu19ksubb.db Biocore Data Team Affymetrix Murine Genome 19k Set annotation data (chip mu19ksubb)
mu19ksubbcdf Biocore Data Team mu19ksubbcdf
mu19ksubc.db Biocore Data Team Affymetrix Murine Genome 19k Set annotation data (chip mu19ksubc)
mu19ksubccdf Biocore Data Team mu19ksubccdf
Mu22v3.db Biocore Data Team FHCRC Genomics Shared Resource Mu22v3 Annotation Data (Mu22v3)
mu6500subacdf Biocore Data Team mu6500subacdf
mu6500subbcdf Biocore Data Team mu6500subbcdf
mu6500subccdf Biocore Data Team mu6500subccdf
mu6500subdcdf Biocore Data Team mu6500subdcdf
mwgcod.db Diego Diez GE CodeLink Mouse Whole Genome Bioarray (~36 000 mouse gene targets) annotation data (chip mwgcod)
nugomm1a520177.db Philip de Groot Affymetrix nugomm1a520177 annotation data (chip nugomm1a520177)
nugomm1a520177cdf Philip de Groot nugomm1a520177cdf
nugomm1a520177probe Philip de Groot Probe sequence data for microarrays of type nugomm1a520177
org.Mm.eg.db Biocore Data Team Genome wide annotation for Mouse