yaqcaffy

Affymetrix expression data quality control and reproducibility analysis

Bioconductor version: 2.6

Quality control of Affymetrix GeneChip expression data and reproducibility analysis of human whole genome chips with the MAQC reference datasets.

Author: Laurent Gatto

Maintainer: Laurent Gatto <laurent.gatto at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("yaqcaffy")

To cite this package in a publication, start R and enter:

    citation("yaqcaffy")

PDF	R Script	yaqcaffy: Affymetrix quality control and MAQC reproducibility
PDF		Reference Manual

biocViews	Microarray, OneChannel, QualityControl, ReportWriting
Depends	simpleaffy(>= 2.19.3), methods
Imports	simpleaffy, methods
Suggests	MAQCsubsetAFX, affydata, xtable, tcltk2, tcltk
System Requirements
License	Artistic-2.0
URL	http://sites.google.com/site/laurentgatto/r-bioconductor/yaqcaffy
Depends On Me
Imports Me
Suggests Me
Version	1.8.0
Since	Bioconductor 2.2 (R-2.7)

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