nudge

Normal Uniform Differential Gene Expression detection

Bioconductor version: 2.6

Package for normalizing microarray data in single and multiple replicate experiments and fitting a normal-uniform mixture to detect differentially expressed genes in the cases where the two samples are being compared directly or indirectly (via a common reference sample)

Author: N. Dean <nemad at stat.washington.edu> and A. E. Raftery <raftery at stat.washington.edu>

Maintainer: N. Dean <nemad at stat.washington.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("nudge")

To cite this package in a publication, start R and enter:

    citation("nudge")

Documentation

PDF R Script nudge Overview
PDF nvignplot1.pdf
PDF nvignplot2.pdf
PDF nvignplot3.pdf
PDF nvignplot4.pdf
PDF   Reference Manual

Details

biocViews Microarray, TwoChannel, DifferentialExpression
Depends stats
Imports
Suggests
System Requirements
License GPL
URL
Depends On Me
Imports Me
Suggests Me
Version 1.14.0
Since Bioconductor 1.8 (R-2.3)

Package Downloads

Package Source nudge_1.14.0.tar.gz
Windows Binary nudge_1.14.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary nudge_1.14.0.tgz
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Fred Hutchinson Cancer Research Center