chipseq

chipseq: A package for analyzing chipseq data

Bioconductor version: 2.6

Tools for helping process short read data for chipseq experiments

Author: Deepayan Sarkar, Robert Gentleman, Michael Lawrence, Zizhen Yao

Maintainer: Biocore Team c/o BioC user list <bioconductor at stat.math.ethz.ch>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("chipseq")

To cite this package in a publication, start R and enter:

    citation("chipseq")

PDF	R Script	A Sample ChIP-Seq analysis workflow
PDF		Reference Manual

biocViews	Infrastructure, Bioinformatics
Depends	methods, IRanges(>= 1.6.10), GenomicRanges(>= 1.0.7), BSgenome, ShortRead
Imports	BSgenome, GenomicRanges, IRanges, lattice, methods, ShortRead, stats
Suggests	GenomicFeatures, GenomicFeatures.Mmusculus.UCSC.mm9, GenomicFeatures.Hsapiens.UCSC.hg18, BSgenome.Mmusculus.UCSC.mm9
System Requirements
License	Artistic-2.0
URL
Depends On Me	PICS
Imports Me
Suggests Me	oneChannelGUI
Version	0.4.1
Since	Bioconductor 2.5 (R-2.10)

Common Bioconductor workflows include:

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