GOSemSim

GO-terms Semantic Similarity Measures

Bioconductor version: 2.6

Implemented five methods proposed by Resnik, Schlicker, Jiang, Lin and Wang respectively for estimating GO semantic similarities. Support many species, including Anopheles, Arabidopsis, Bovine, Canine, Chicken, Chimp, E coli strain K12 and strain Sakai, Fly, Human, Malaria, Mouse, Pig, Rhesus, Rat, Worm, Xenopus, Yeast, and Zebrafish.

Author: Guangchuang Yu, Chuanle Xiao

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("GOSemSim")

To cite this package in a publication, start R and enter:

    citation("GOSemSim")

Documentation

PDF	R Script	Semantic Similarity Measures
PDF		Reference Manual

Details

biocViews	GO, Clustering, Pathways
Depends	AnnotationDbi, GO.db, org.Hs.eg.db
Imports
Suggests	org.Ag.eg.db, org.At.tair.db, org.Bt.eg.db, org.Ce.eg.db, org.Cf.eg.db, org.Dm.eg.db, org.Dr.eg.db, org.EcK12.eg.db, org.EcSakai.eg.db, org.Gg.eg.db, org.Mm.eg.db, org.Mmu.eg.db, org.Pf.plasmo.db, org.Pt.eg.db, org.Rn.eg.db, org.Sc.sgd.db, org.Ss.eg.db, org.Xl.eg.db
System Requirements
License	GPL-2
URL
Depends On Me
Imports Me
Suggests Me
Version	1.6.8
Since	Bioconductor 2.4 (R-2.9)

Package Downloads

Package Source	GOSemSim_1.6.8.tar.gz
Windows Binary	GOSemSim_1.6.8.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	GOSemSim_1.6.8.tgz
Package Downloads Report	Download Stats

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