<?php
//connect to database server and the database
$db = "data/biocViewsVocab.sqlite";
$db_link = sqlite_open($db);
// Recursive function to create the menu structure string
function createTree($db, $node, $txt, $level)
{
$txt=$txt.$level."|".$node."\n";
$query = "SELECT * FROM biocViews WHERE edgeFrom='".$node."'";
$result = sqlite_query($db, $query);
if (sizeof($result) > 0){
$level=$level.".";
while($row=sqlite_fetch_array($result))
$txt=createTree($db, $row["edgeTo"], $txt, $level);
}
return $txt;
}
$txt = createTree($db_link, "BiocViews", "", ".");
?>
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01//EN" "http://www.w3.org/TR/html4/strict.dtd">
<html>
<head>
<meta http-equiv="Content-Type" content="text/html;charset=utf-8">
<meta name="robots" content="index,nofollow">
<link rel="stylesheet" href="layersmenu.css" type="text/css"></link>
<style type="text/css">
<!--
@import url("layerstreemenu.css");
//-->
</style>
<?php include ("libjs/layersmenu-browser_detection.js"); ?>
<script language="JavaScript" type="text/javascript" src="libjs/layerstreemenu-cookies.js"></script>
<title>biocViews categories - Bioconductor Wiki</title>
<script type="text/javascript" src="http://wiki.fhcrc.org/wiki/common/js/common.js"></script>
<script type="text/javascript">
<!--// common functions
// We keep here the state of the search box
searchIsDisabled = true;
function searchChange(e) {
// Update search buttons status according to search box content.
// Ignore empty or whitespace search term.
var value = e.value.replace(/\s+/, '');
if (value == '' || searchIsDisabled) {
searchSetDisabled(true);
} else {
searchSetDisabled(false);
}
}
function searchSetDisabled(flag) {
// Enable or disable search
document.getElementById('fullsearch').disabled = flag;
document.getElementById('titlesearch').disabled = flag;
}
function searchFocus(e) {
// Update search input content on focus
if (e.value == 'Search') {
e.value = '';
e.className = '';
searchIsDisabled = false;
}
}
function searchBlur(e) {
// Update search input content on blur
if (e.value == '') {
e.value = 'Search';
e.className = 'disabled';
searchIsDisabled = true;
}
}
function actionsMenuInit(title) {
// Initialize action menu
for (i = 0; i < document.forms.length; i++) {
var form = document.forms[i];
if (form.className == 'actionsmenu') {
// Check if this form needs update
var div = form.getElementsByTagName('div')[0];
var label = div.getElementsByTagName('label')[0];
if (label) {
// This is the first time: remove label and do buton.
div.removeChild(label);
var dobutton = div.getElementsByTagName('input')[0];
div.removeChild(dobutton);
// and add menu title
var select = div.getElementsByTagName('select')[0];
var item = document.createElement('option');
item.appendChild(document.createTextNode(title));
item.value = 'show';
select.insertBefore(item, select.options[0]);
select.selectedIndex = 0;
}
}
}
}
//-->
</script>
<link rel="stylesheet" type="text/css" charset="utf-8" media="all" href="http://wiki.fhcrc.org/wiki/modern/css/common.css">
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<link rel="Start" href="/bioc/FrontPage">
<link rel="Alternate" title="Wiki Markup" href="http://wiki.fhcrc.org/bioc/biocViews_categories?action=raw">
<link rel="Alternate" media="print" title="Print View" href="http://wiki.fhcrc.org/bioc/biocViews_categories?action=print">
<link rel="Search" href="http://wiki.fhcrc.org/bioc/FindPage">
<link rel="Index" href="http://wiki.fhcrc.org/bioc/TitleIndex">
<link rel="Glossary" href="http://wiki.fhcrc.org/bioc/WordIndex">
<link rel="Help" href="http://wiki.fhcrc.org/bioc/HelpOnFormatting">
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<div id="logo"><a href="http://wiki.fhcrc.org/bioc/FrontPage"><img src="http://wiki.fhcrc.org/wiki/bioc/images/bioclogo-small.jpg" alt="Bioconductor Logo"></a></div>
<form id="searchform" method="get" action="">
<div>
<input type="hidden" name="action" value="fullsearch">
<input type="hidden" name="context" value="180">
<label for="searchinput">Search:</label>
<input id="searchinput" type="text" name="value" value="" size="20"
onfocus="searchFocus(this)" onblur="searchBlur(this)"
onkeyup="searchChange(this)" onchange="searchChange(this)" alt="Search">
<input id="titlesearch" name="titlesearch" type="submit"
value="Titles" alt="Search Titles">
<input id="fullsearch" name="fullsearch" type="submit"
value="Text" alt="Search Full Text">
</div>
</form>
<script type="text/javascript">
<!--// Initialize search form
var f = document.getElementById('searchform');
f.getElementsByTagName('label')[0].style.display = 'none';
var e = document.getElementById('searchinput');
searchChange(e);
searchBlur(e);
//-->
</script>
<ul id="username"><li><a href="http://wiki.fhcrc.org//bioc/biocViews_categories?action=login" id="login">login</a></li></ul>
<div id="locationline">
<ul id="pagelocation">
<li><a class="backlink" title="Click to do a full-text search for this title" href="http://wiki.fhcrc.org/bioc/biocViews_categories?action=fullsearch&value=linkto%3A%22biocViews+categories%22&context=180">biocViews categories</a></li>
</ul>
</div>
<ul id="navibar">
<li class="wikilink"><a href="http://wiki.fhcrc.org/bioc/FrontPage">FrontPage</a></li>
<li class="wikilink"><a href="http://wiki.fhcrc.org/bioc/RecentChanges">RecentChanges</a></li>
<li class="wikilink"><a href="http://wiki.fhcrc.org/bioc/FindPage">FindPage</a></li>
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<li class="wikilink"><a href="http://wiki.fhcrc.org/bioc/biocViews_categories">biocViews categories</a></li>
<li class="current"><a href=".">available categories</a></li>
</ul>
<div id="pageline"><hr style="display:none;"></div>
<ul class="editbar"><li><span class="disabled">Immutable Page</span></li>
<li><span class="disabled">Info</span></li>
<li><span class="disabled">Attachments<span></li>
<li><form class="actionsmenu" method="get" action="">
<div>
<label>More Actions:</label>
<select name="action"
onchange="if ((this.selectedIndex != 0) &&
(this.options[this.selectedIndex].disabled == false)) {
this.form.submit();
}
this.selectedIndex = 0;">
</select>
<input type="submit" value="Go!">
</div>
<script type="text/javascript">
</script>
</form>
</li>
</ul>
<div id="page" lang="en" dir="ltr">
<div dir="ltr" id="content" lang="en"><span class="anchor" id="top"></span>
<div class="contents topic">
<h3><a class="toc-backref" href="#id2" id="categories" name="categories">Categories</a></h3>
<p>The biocViews package uses a restricted vocabulary so only use terms from the following list. If you would like to suggest a new term, send an email to the bioc-devel mailing list.</p>
<?php
include ("lib/template.inc.php");
include ("lib/layersmenu.inc.php");
// build and print the menu
$mid = new LayersMenu();
$mid->setMenuStructureString($txt);
$mid->parseStructureForMenu("treemenu1");
print $mid->newTreeMenu("treemenu1");
?>
<br><br>
<span class="anchor" id="bottom"></span></div><p id="pageinfo" class="info" lang="en" dir="ltr">available categories (external page, created 2008-10-10 18:05:41 by <span title="PatrickAboyoun @ DHCP157213.FHCRC.ORG[140.107.157.213]"><a class="nonexistent" href="/bioc/PatrickAboyoun" title="PatrickAboyoun @ DHCP157213.FHCRC.ORG[140.107.157.213]">PatrickAboyoun</a></span>)</p>
<div id="pagebottom"></div>
</div>
<div id="footer">
<ul class="editbar"><li><span class="disabled">Immutable Page</span></li>
<li><span class="disabled">Info</span></li>
<li><span class="disabled">Attachments<span></li>
<li><form class="actionsmenu" method="get" action="">
<div>
<label>More Actions:</label>
<select name="action"
onchange="if ((this.selectedIndex != 0) &&
(this.options[this.selectedIndex].disabled == false)) {
this.form.submit();
}
this.selectedIndex = 0;">
</select>
<input type="submit" value="Go!">
</div>
<script type="text/javascript">
<!--// Init menu
actionsMenuInit('More Actions:');
//-->
</script>
</form>
</li>
</ul>
<ul id="credits">
<li><a href="http://moinmoin.wikiwikiweb.de/">MoinMoin Powered</a></li><li><a href="http://www.python.org/">Python Powered</a></li><li><a href="http://validator.w3.org/check?uri=referer">Valid HTML 4.01</a></li>
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