\name{GeneAnswers-package}
\alias{GeneAnswers-package}
\alias{GeneAnswers}
\docType{package}
\title{
Integrated Interpretation of Genes
}
\description{
GeneAnswers provide an integrated tool for given genes biological or medical interpretation. It includes statistical test of given genes and specified categories. 
}
\details{
\tabular{ll}{
Package: \tab GeneAnswers\cr
Type: \tab Package\cr
Version: \tab 1.0\cr
Date: \tab 2009-07-16\cr
License: \tab LGPL version 2 or newer \cr
}
}
\author{
Gang Feng, Pan Du and Simon Lin


Maintainer: Gang Feng <g-feng@northwestern.edu> and Pan Du <dupan@northwestern.edu>
}
\references{
1.	Feng, G., Du, P., Krett, N., Tessel, M., Rosen, S., Kibbe, W.A. and Lin, S.M., BioConductor Methods to Visualize Genelist Annotations (Submitted)

2. Du, P., Feng, G., Flatow, J., Song, J., Holko, M., Kibbe, W.A. and Lin, S.M., (2009) 'From disease ontology to disease-ontology lite: statistical methods to adapt a general-purpose ontology for the test of gene-ontology associations', Bioinformatics 25(12):i63-8

3. Osborne, J.D., Flatow, J., Holko, M., Lin, S.M., Kibbe, W.A., Zhu, L.J., Danila, M.I., Feng, G. and Chisholm, R.L., Annotating the human genome with Disease Ontology. BMC Genomics. 2009 Jul 7;10 Suppl 1:S6.
}
\examples{
data('humanExpr')
data('humanGeneInput')
x <- geneAnswersBuilder(humanGeneInput, 'org.Hs.eg.db', categoryType='GO.BP', testType='hyperG', pvalueT=0.01, FDR.correct=TRUE, geneExpressionProfile=humanExpr)
class(x)
}
\keyword{ package }