beadarray

Quality assessment and low-level analysis for Illumina BeadArray data

Bioconductor version: 2.5

The package is able to read bead-level data (raw TIFFs and text files) output by BeadScan as well as bead-summary data from BeadStudio. Methods for quality assessment and low-level analysis are provided.

Author: Mark Dunning, Mike Smith, Jonathan Cairns, Andy Lynch, Matt Ritchie

Maintainer: Mark Dunning <Mark.Dunning at cancer.org.uk>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("beadarray")

To cite this package in a publication, start R and enter:

    citation("beadarray")

Documentation

PDF		BASH.pdf
PDF	R Script	beadarray.pdf
PDF		beadlevel.pdf
PDF		beadsummary.pdf
PDF		Reference Manual

Details

biocViews	Microarray, OneChannel, QualityControl, Preprocessing
Depends	Biobase(>= 2.5.5), methods
Imports	hwriter, limma
Suggests	lumi, vsn, affy
System Requirements
License	GPL
URL
Depends On Me
Imports Me	arrayQualityMetrics
Suggests Me	beadarraySNP, lumi
Version	1.14.0
Since	Bioconductor 1.8 (R-2.3)

Package Downloads

Package Source	beadarray_1.14.0.tar.gz
Windows Binary	beadarray_1.14.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	beadarray_1.14.0.tgz
Package Downloads Report	Download Stats

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