IRanges

Infrastructure for manipulating intervals on sequences

Bioconductor version: 2.5

The IRanges class and its extensions are low-level containers for storing sets of integer ranges. A typical use of these containers in biology is for representing a set of chromosome regions. More specific extensions of the IRanges class will typically allow the storage of additional information attached to each chromosome region as well as a hierarchical relationship between these regions.

Author: H. Pages, P. Aboyoun and M. Lawrence

Maintainer: Biocore Team c/o BioC user list <bioconductor at stat.math.ethz.ch>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("IRanges")

To cite this package in a publication, start R and enter:

    citation("IRanges")

Documentation

PDF	R Script	An Introduction to IRanges
PDF	R Script	Rle Tips and Tricks
PDF		Reference Manual

Details

biocViews	Infrastructure, Genetics
Depends	R (>= 2.8.0), methods, utils, stats
Imports	methods, utils, stats
Suggests	RUnit
System Requirements
License	Artistic-2.0
URL
Depends On Me	biocDatasets, Biostrings, BSgenome, ChIPpeakAnno, chipseq, harbChIP, Masks.Dmelanogaster.UCSC.dm3, rMAT, ShortRead
Imports Me	biocDatasets, Biostrings, ChIPpeakAnno, chipseq, ChIPseqR, ChIPsim, ChromHeatMap, GenomicFeatures, GenomicFeatures, GGtools, Masks.Dmelanogaster.UCSC.dm3, oligoClasses, pdInfoBuilder, rMAT, Rolexa, rtracklayer, ShortRead
Suggests Me	HilbertVis, HilbertVisGUI, oneChannelGUI, yeastRNASeq
Version	1.4.16
Since	Bioconductor 2.3 (R-2.8)

Package Downloads

Package Source	IRanges_1.4.16.tar.gz
Windows Binary	IRanges_1.4.16.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	IRanges_1.4.16.tgz
Package Downloads Report	Download Stats

Workflows »

Common Bioconductor workflows include:

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Hosting provided by Fred Hutchinson Cancer Research Center