GSEABase

Gene set enrichment data structures and methods

Bioconductor version: 2.5

This package provides classes and methods to support Gene Set Enrichment Analysis (GSEA).

Author: Martin Morgan, Seth Falcon, Robert Gentleman

Maintainer: Biocore Team c/o BioC user list <bioconductor at stat.math.ethz.ch>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("GSEABase")

To cite this package in a publication, start R and enter:

    citation("GSEABase")

PDF	R Script	An introduction to GSEABase
PDF		Reference Manual

biocViews	Infrastructure, Bioinformatics
Depends	R (>= 2.6.0), Biobase, annotate, methods, graph
Imports	annotate, AnnotationDbi, Biobase, graph, methods, XML
Suggests	Ruuid, hgu95av2.db, GO.db, org.Hs.eg.db
System Requirements
License	Artistic-2.0
URL
Depends On Me	BicARE, GGBase, GGtools
Imports Me	Category, cellHTS2, PCpheno
Suggests Me	BiocCaseStudies, globaltest, GSEAlm, PGSEA
Version	1.8.0
Since	Bioconductor 2.1 (R-2.6)

Common Bioconductor workflows include:

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!