GOSemSim

GO-terms Semantic Similarity Measures

Bioconductor version: 2.5

Methods for estimating GO semantic similarities. Implemented five methods proposed by Resnik, Schlicker, Jiang, Lin and Wang respectively. Support five species: human, rat, mouse, fly, and yeast.

Author: Guangchuang Yu, Chuanle Xiao

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("GOSemSim")

To cite this package in a publication, start R and enter:

    citation("GOSemSim")

Documentation

PDF	R Script	Semantic Similarity Measures
PDF		Reference Manual

Details

biocViews	GO, Clustering, Pathways
Depends	AnnotationDbi, GO.db, org.Hs.eg.db, org.Dm.eg.db, org.Mm.eg.db, org.Rn.eg.db, org.Sc.sgd.db
Imports
Suggests
System Requirements
License	GPL-2
URL
Depends On Me
Imports Me
Suggests Me
Version	1.4.0
Since	Bioconductor 2.4 (R-2.9)

Package Downloads

Package Source	GOSemSim_1.4.0.tar.gz
Windows Binary	GOSemSim_1.4.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	GOSemSim_1.4.0.tgz
Package Downloads Report	Download Stats

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