| Package | Maintainer | Title |
|---|---|---|
| bgafun | Iain Wallace | BGAfun A method to identify specifity determining residues in protein families |
| BioSeqClass | Li Hong | Classification for Biological Sequences |
| CMA | Christoph Bernau | Synthesis of microarray-based classification |
| ctc | Antoine Lucas | Cluster and Tree Conversion. |
| gaga | David Rossell | GaGa hierarchical model for microarray data analysis |
| gene2pathway | Holger Froehlich | Prediction of KEGG pathway membership for individual genes based on InterPro domain signatures |
| gpls | Biocore Team c/o BioC user list | Classification using generalized partial least squares |
| iterativeBMA | Ka Yee Yeung | The Iterative Bayesian Model Averaging (BMA) algorithm |
| logicFS | Holger Schwender | Identification of SNP Interactions |
| made4 | Aedin Culhane | Multivariate analysis of microarray data using ADE4 |
| maigesPack | Gustavo H. Esteves | Functions to handle cDNA microarray data, including several methods of data analysis |
| MCRestimate | Marc Johannes | Misclassification error estimation with cross-validation |
| MiPP | Sukwoo Kim | Misclassification Penalized Posterior Classification |
| MLInterfaces | V. Carey | Uniform interfaces to R machine learning procedures for data in Bioconductor containers |
| pamr | Rob Tibshirani | Pam: prediction analysis for microarrays |
| pdmclass | James W. MacDonald | Classification of Microarray Samples using Penalized Discriminant Methods |
| rHVDM | Martino Barenco | Hidden Variable Dynamic Modeling |
| Rmagpie | Camille Maumet | MicroArray Gene-expression-based Program In Error rate estimation |
| RTools4TB | Aurelie Bergon | Data mining of public microarray data through connections to the TranscriptomeBrowser database. |
| vbmp | Nicola Lama | Variational Bayesian Multinomial Probit Regression |