xcms

LC/MS and GC/MS Data Analysis

Framework for processing and visualization of chromatographically separated and single-spectra mass spectral data. Imports from AIA/ANDI NetCDF, mzXML, and mzData files. Preprocesses data for high-throughput, untargeted analyte profiling.

Author	Colin A. Smith , Ralf Tautenhahn
Maintainer	Colin A. Smith

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("xcms")

Documentation

FlowChart.pdf	PDF
Grouping FTICR-MS data with xcms	PDF	R Script
Installation Instructions for xcms	PDF	R Script
Processing Tandem-MS and MS$^n$ data with with xcms	PDF	R Script
LC/MS Preprocessing and Analysis with xcms	PDF	R Script
Reference Manual

Details

biocViews	Technology , MassSpectrometry
Depends	R , methods
Imports
Suggests	faahKO , msdata , multtest , ncdf , rgl , MassSpecWavelet , Rgraphviz
System Requirements	NetCDF, zlib
License	GPL version 2 or newer
URL	http://metlin.scripps.edu/download/
Depends On Me	CAMERA , flagme , TargetSearch
Imports Me
Suggests Me	MassSpecWavelet
Development History	Bioconductor Changelog

Package Downloads

Package source	xcms_1.16.3.tar.gz
Windows binary	xcms_1.16.3.zip
MacOS X 10.4 (Tiger) binary	xcms_1.16.3.tgz
MacOS X 10.5 (Leopard) binary	xcms_1.16.3.tgz
Package Downloads Report	Downloads Stats