tilingArray
Transcript mapping with high-density oligonucleotide tiling
arrays
The package provides functionality that can be useful for
the analysis of high-density tiling microarray data (such as
from Affymetrix genechips) for measuring transcript abundance
and architecture. The main functionalities of the package are:
1. the class 'segmentation' for representing partitionings of a
linear series of data; 2. the function 'segment' for fitting
piecewise constant models using a dynamic programming algorithm
that is both fast and exact; 3. the function 'confint' for
calculating confidence intervals using the strucchange package;
4. the function 'plotAlongChrom' for generating pretty plots;
5. the function 'normalizeByReference' for probe-sequence
dependent response adjustment from a (set of) reference
hybridizations.
| Author |
Wolfgang Huber, Zhenyu Xu, Joern Toedling with contributions
from Matt Ritchie |
| Maintainer |
Zhenyu Xu |
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("tilingArray")
Documentation
Details
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| License |
The Artistic License, Version 2.0 |
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| Development History |
Bioconductor Changelog
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