spotSegmentation

Microarray Spot Segmentation and Gridding for Blocks of Microarray Spots

Spot segmentation via model-based clustering and gridding for blocks within microarray slides, as described in Li et al, Robust Model-Based Segmentation of Microarray Images, Technical Report no. 473, Department of Statistics, University of Washington.

Author Qunhua Li, Chris Fraley, Adrian Raftery Department of Statistics, University of Washington
Maintainer Chris Fraley

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("spotSegmentation")

Documentation

spotsegdoc.pdf PDF R Script
Reference Manual

Details

biocViews
Depends
R , mclust
Imports
Suggests
System Requirements
License GPL version 2 or higher
URL http://www.stat.washington.edu/fraley
Depends On Me
Imports Me
Suggests Me
Development History Bioconductor Changelog

Package Downloads

Package source spotSegmentation_1.18.0.tar.gz
Windows binary spotSegmentation_1.18.0.zip
MacOS X 10.4 (Tiger) binary spotSegmentation_1.18.0.tgz
MacOS X 10.5 (Leopard) binary spotSegmentation_1.18.0.tgz
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