snapCGH

Segmentation, normalisation and processing of aCGH data.

Methods for segmenting, normalising and processing aCGH data; including plotting functions for visualising raw and segmented data for individual and multiple arrays.

Author Mike L. Smith, John C. Marioni, Steven McKinney, Thomas Hardcastle, Natalie P. Thorne
Maintainer John Marioni

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("snapCGH")

Documentation

Segmentation Overview PDF R Script
Reference Manual

Details

biocViews
Depends
limma , tilingArray , DNAcopy , GLAD , cluster , methods , aCGH
Imports
Suggests
System Requirements
License GPL
URL
Depends On Me
Imports Me
Suggests Me
Development History Bioconductor Changelog

Package Downloads

Package source snapCGH_1.12.0.tar.gz
Windows binary snapCGH_1.12.0.zip
MacOS X 10.4 (Tiger) binary snapCGH_1.12.0.tgz
MacOS X 10.5 (Leopard) binary snapCGH_1.12.0.tgz
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