pcot2

Principal Coordinates and Hotelling's T-Square method

PCOT2 is a permutation-based method for investigating changes in the activity of multi-gene networks. It utilizes inter-gene correlation information to detect significant alterations in gene network activities. Currently it can be applied to two-sample comparisons.

Author	Sarah Song, Mik Black
Maintainer	Sarah Song

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("pcot2")

Documentation

HowToUseGeneLocator.pdf	PDF
PCOT2 Vignette	PDF	R Script
Reference Manual

Details

biocViews	Microarray , DifferentialExpression
Depends	R , grDevices , Biobase , amap
Imports
Suggests	multtest , hu6800.db , KEGG.db , mvtnorm
System Requirements
License	GPL version 2 or newer
URL
Depends On Me
Imports Me
Suggests Me
Development History	Bioconductor Changelog

Package Downloads

Package source	pcot2_1.12.0.tar.gz
Windows binary	pcot2_1.12.0.zip
MacOS X 10.4 (Tiger) binary	pcot2_1.12.0.tgz
MacOS X 10.5 (Leopard) binary	pcot2_1.12.0.tgz
Package Downloads Report	Downloads Stats