globaltest

Testing Association of Groups of Genes with a Clinical Variable

Testing whether sets of genes (e.g. KEGG pathways of GO terms) are significantly associated with a clinical variable of interest.

Author	Jelle Goeman and Jan Oosting
Maintainer	Jelle Goeman

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("globaltest")

GlobalTest	PDF	R Script
Reference Manual

biocViews	Microarray , OneChannel , Bioinformatics , DifferentialExpression , GO , Pathways
Depends	methods
Imports	Biobase , survival , AnnotationDbi , annotate , multtest , graphics
Suggests	vsn , golubEsets , KEGG.db , hu6800.db , GOstats , Rgraphviz , GO.db , annotate
System Requirements
License	GPL version 2 or newer
URL	http://www.msbi.nl/goeman
Depends On Me	GlobalAncova , SIM
Imports Me
Suggests Me	topGO
Development History	Bioconductor Changelog