annaffy

Annotation tools for Affymetrix biological metadata

Functions for handling data from Bioconductor Affymetrix annotation data packages. Produces compact HTML and text reports including experimental data and URL links to many online databases. Allows searching biological metadata using various criteria.

Author	Colin A. Smith
Maintainer	Colin A. Smith

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("annaffy")

Documentation

annaffy Primer	PDF	R Script
Reference Manual

Details

biocViews	OneChannel , Microarray , Annotation , GO , Pathways , ReportWriting
Depends	R , methods , Biobase , GO.db , KEGG.db
Imports	AnnotationDbi
Suggests	hgu95av2.db , multtest , tcltk
System Requirements
License	LGPL
URL
Depends On Me	GGtools , stam , webbioc
Imports Me	affycoretools
Suggests Me	AffyExpress , ArrayTools , BiocCaseStudies , maDB , oneChannelGUI
Development History	Bioconductor Changelog

Package Downloads

Package source	annaffy_1.16.0.tar.gz
Windows binary	annaffy_1.16.0.zip
MacOS X 10.4 (Tiger) binary	annaffy_1.16.0.tgz
MacOS X 10.5 (Leopard) binary	annaffy_1.16.0.tgz
Package Downloads Report	Downloads Stats