affy

Methods for Affymetrix Oligonucleotide Arrays

The package contains functions for exploratory oligonucleotide array analysis. The dependance to tkWidgets only concerns few convenience functions. 'affy' is fully functional without it.

Author	Rafael A. Irizarry , Laurent Gautier , Benjamin Milo Bolstad , and Crispin Miller with contributions from Magnus Astrand , Leslie M. Cope , Robert Gentleman, Jeff Gentry, Conrad Halling , Wolfgang Huber, James MacDonald , Benjamin I. P. Rubinstein, Christopher Workman , John Zhang
Maintainer	Rafael A. Irizarry

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("affy")

Documentation

1. Primer	PDF	R Script
2. Built-in Processing Methods	PDF	R Script
3. Custom Processing Methods	PDF	R Script
4. Import Methods	PDF	R Script
Reference Manual

Details

biocViews	Microarray , OneChannel , Preprocessing
Depends	R , Biobase
Imports	Biobase , graphics , methods , stats , utils , affyio , preprocessCore
Suggests	tkWidgets , affydata
System Requirements
License	LGPL (>= 2.0)
URL
Depends On Me	adSplit , affyContam , affycoretools , AffyExpress , affylmGUI , affyPara , affypdnn , affyPLM , affyQCReport , AffyTiling , altcdfenvs , arrayMvout , ArrayTools , bgx , dualKS , ecolitk , exonmap , gcrma , GeneTraffic , Harshlight , logitT , lumi , maDB , makecdfenv , panp , plier , plw , puma , qpcrNorm , RefPlus , rHVDM , simpleaffy , sscore , webbioc
Imports Me	ArrayExpress , arrayQualityMetrics , matchprobes , simpleaffy , tilingArray , vsn
Suggests Me	AnnotationDbi , beadarray , beadarraySNP , BiocCaseStudies , Biostrings , BufferedMatrixMethods , factDesign , GeneRegionScan , hexbin , limma , made4 , matchprobes , oneChannelGUI , siggenes
Development History	Bioconductor Changelog

Package Downloads

Package source	affy_1.22.1.tar.gz
Windows binary	affy_1.22.1.zip
MacOS X 10.4 (Tiger) binary	affy_1.22.1.tgz
MacOS X 10.5 (Leopard) binary	affy_1.22.1.tgz
Package Downloads Report	Downloads Stats