This package implements the Signaling Pathway Impact Analysis (SPIA) which uses the information form a list of differentially expressed genes and their log fold changes together with signaling pathways topology, in order to identify the pathways most relevant to the condition under the study.
Author | Adi Laurentiu Tarca , Purvesh Kathri and Sorin Draghici |
Maintainer | Adi Laurentiu Tarca |
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R") biocLite("SPIA")
SPIA | R Script | |
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Reference Manual |
biocViews | |
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Depends |
R
,
graphics
,
RCurl
|
Imports |
graphics
,
RCurl
|
Suggests | |
System Requirements | |
License | GPL (>=2) |
URL | http://bioinformatics.oxfordjournals.org/cgi/reprint/btn577v1 |
Depends On Me | |
Imports Me | |
Suggests Me | |
Development History | Bioconductor Changelog |
Package source | SPIA_1.0.0.tar.gz |
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Windows binary | SPIA_1.0.0.zip |
MacOS X 10.4 (Tiger) binary | SPIA_1.0.0.tgz |
MacOS X 10.5 (Leopard) binary | SPIA_1.0.0.tgz |
Package Downloads Report | Downloads Stats |