OrderedList

Similarities of Ordered Gene Lists

Detection of similarities between ordered lists of genes. Thereby, either simple lists can be compared or gene expression data can be used to deduce the lists. Significance of similarities is evaluated by shuffling lists or by resampling in microarray data, respectively.

Author	Xinan Yang, Stefanie Scheid, Claudio Lottaz
Maintainer	Claudio Lottaz

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("OrderedList")

Documentation

bcb_logo.pdf	PDF
Similarities of Ordered Gene Lists	PDF	R Script
Reference Manual

Details

biocViews	Microarray , DifferentialExpression , MultipleComparisons
Depends	R , Biobase , twilight
Imports
Suggests
System Requirements
License	GPL (>= 2)
URL	http://compdiag.molgen.mpg.de/software/index.shtml
Depends On Me
Imports Me
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Development History	Bioconductor Changelog

Package Downloads

Package source	OrderedList_1.16.0.tar.gz
Windows binary	OrderedList_1.16.0.zip
MacOS X 10.4 (Tiger) binary	OrderedList_1.16.0.tgz
MacOS X 10.5 (Leopard) binary	OrderedList_1.16.0.tgz
Package Downloads Report	Downloads Stats