IRanges

Infrastructure for manipulating intervals on sequences

The IRanges class and its extensions are low-level containers for storing sets of integer ranges. A typical use of these containers in biology is for representing a set of chromosome regions. More specific extensions of the IRanges class will typically allow the storage of additional information attached to each chromosome region as well as a hierarchical relationship between these regions.

Author	H. Pages, P. Aboyoun and M. Lawrence
Maintainer	Biocore Team c/o BioC user list

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("IRanges")

Documentation

An Introduction to IRanges	PDF	R Script
Reference Manual

Details

biocViews	Infrastructure , Genetics
Depends	R , methods , utils , stats
Imports	methods , utils , stats
Suggests	RUnit
System Requirements
License	Artistic-2.0
URL
Depends On Me	biocDatasets , Biostrings , BSgenome , ShortRead
Imports Me	biocDatasets , Biostrings , GGtools , MEDME , oligoClasses , pdInfoBuilder , rtracklayer , ShortRead
Suggests Me	oneChannelGUI
Development History	Bioconductor Changelog

Package Downloads

Package source	IRanges_1.2.3.tar.gz
Windows binary	IRanges_1.2.3.zip
MacOS X 10.4 (Tiger) binary	IRanges_1.2.3.tgz
MacOS X 10.5 (Leopard) binary	IRanges_1.2.3.tgz
Package Downloads Report	Downloads Stats