GeneRegionScan
GeneRegionScan
A package with focus on analysis of discrete regions of
the genome. This package is useful for investigation of one or
a few genes using Affymetrix data, since it will extract probe
level data using the Affymetrix Power Tools application and
wrap these data into a ProbeLevelSet. A ProbeLevelSet directly
extends the expressionSet, but includes additional information
about the sequence of each probe and the probe set it is
derived from. The package includes a number of functions used
for plotting these probe level data as a function of location
along sequences of mRNA-strands. This can be used for analysis
of variable splicing, and is especially well suited for use
with exon-array data.
| Author |
Lasse Folkersen, Diego Diez |
| Maintainer |
Lasse Folkersen |
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("GeneRegionScan")
Documentation
Details
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| License |
GPL version 2 or newer |
| URL |
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| Development History |
Bioconductor Changelog
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Package Downloads