ArrayTools

geneChip Analysis Package

This package is designed to provide solutions for quality assessment and to detect differentially expressed genes for the Affymetrix GeneChips, including both 3' -arrays and gene 1.0-ST arrays. The package generates comprehensive analysis reports in HTML format. Hyperlinks on the report page will lead to a series of QC plots, processed data, and differentially expressed gene lists. Differentially expressed genes are reported in tabular format with annotations hyperlinked to online biological databases.

Author Xiwei Wu, Arthur Li
Maintainer Arthur Li

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("ArrayTools")

Documentation

1. Primer PDF R Script
Reference Manual

Details

biocViews
Depends
R , affy , Biobase , graphics , grDevices , limma , methods , stats , utils , xtable
Imports
Suggests
System Requirements
License LGPL(>= 2.0)
URL
Depends On Me
Imports Me
Suggests Me
Development History Bioconductor Changelog

Package Downloads

Package source ArrayTools_1.4.0.tar.gz
Windows binary ArrayTools_1.4.0.zip
MacOS X 10.4 (Tiger) binary ArrayTools_1.4.0.tgz
MacOS X 10.5 (Leopard) binary ArrayTools_1.4.0.tgz
Package Downloads Report Downloads Stats