oneChannelGUI

This package extends the capabilities of affylmGUI graphical interface. Affymetrix 3' IVT, gene an exon arrays are actually implemented togheter with Illumina, GEO matrix series files and tab delimited files.

This package was developed to simplify the use of Bioconductor tools for beginners having limited or no experience in writing R code. This library provides a graphical interface allowing QC, filtering, statistical validation, and alternative splicing analysis.

Author	Raffale A Calogero, Bioinformatics and Genomics Unit, Dept. of Clinical and Biological Sciences Torino (Italy)
Maintainer	Raffaele A Calogero

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("oneChannelGUI")

Documentation

Package Downloads

fignew42.pdf

oneChannelGUI Installation

oneChannelGUI Overview

Reference Manual

Package source	oneChannelGUI_1.8.10.tar.gz
Windows binary	oneChannelGUI_1.8.10.zip
MacOS X 10.4 (Tiger) binary	oneChannelGUI_1.8.10.tgz
MacOS X 10.5 (Leopard) binary	oneChannelGUI_1.8.10.tgz
Package Downloads Report	Downloads Stats

Details

biocViews	Microarray , OneChannel , DataImport , QualityControl , Preprocessing , Statistics , DifferentialExpression , MultipleComparisons
Depends	Biobase , affylmGUI , tkWidgets , GOstats , AnnotationDbi
Imports
Suggests	annotate , genefilter , maSigPro , pamr , pdmclass , Rgraphviz , affy , annaffy , affyPLM , multtest , ssize , sizepower , siggenes , RankProd , org.Hs.eg.db , org.Mm.eg.db , org.Rn.eg.db , metaArray , biomaRt , GenomeGraphs , AffyCompatible , Biostrings
System Requirements
License	The Artistic License, Version 2.0
URL	http://www.bioinformatica.unito.it/oneChannelGUI/
Depends On Me
Imports Me
Suggests Me
Development History	Bioconductor Changelog