oligo

Oligonucleotide Arrays

A package to analyze oligonucleotide arrays (expression/SNP/tiling/exon) at probe-level.

Author Benilton Carvalho , Rafael A. Irizarry and Ben Bolstad with contributions from Vince Carey, Robert Gentleman, Wolfgang Huber
Maintainer Benilton Carvalho

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("oligo")

Documentation

Package Downloads
Classes Used in the Oligo Packages
Oligo Vignette
Reference Manual
Package source oligo_1.6.0.tar.gz
Windows binary oligo_1.6.0.zip
MacOS X 10.4 (Tiger) binary oligo_1.6.0.tgz
MacOS X 10.5 (Leopard) binary oligo_1.6.0.tgz
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Details

biocViews
Microarray , OneChannel , TwoChannel , Preprocessing
Depends
methods , R , Biobase , splines , RSQLite , preprocessCore , AnnotationDbi , affxparser , oligoClasses
Imports
Suggests
hapmap100kxba , pd.mapping50k.xba240
System Requirements
License LGPL version 2 or newer
URL
Depends On Me
ITALICS , makePlatformDesign , pdInfoBuilder
Imports Me
Suggests Me
oligoClasses
Development History Bioconductor Changelog