marray

Exploratory analysis for two-color spotted microarray data

Class definitions for two-color spotted microarray data. Fuctions for data input, diagnostic plots, normalization and quality checking.

Author Yee Hwa (Jean) Yang with contributions from Agnes Paquet and Sandrine Dudoit.
Maintainer Yee Hwa (Jean) Yang

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("marray")

Documentation

Package Downloads
ExampleHTML.pdf
marray Overview
marrayClasses Overview
marrayClasses Tutorial (short)
marrayInput Introduction
marray Normalization
marrayPlots Overview
widget1.pdf
Reference Manual
Package source marray_1.20.0.tar.gz
Windows binary marray_1.20.0.zip
MacOS X 10.4 (Tiger) binary marray_1.20.0.tgz
MacOS X 10.5 (Leopard) binary marray_1.20.0.tgz
Package Downloads Report Downloads Stats

Details

biocViews
Microarray , TwoChannel , Preprocessing
Depends
R , limma , methods
Imports
Suggests
tkWidgets
System Requirements
License LGPL
URL http://www.maths.usyd.edu.au/u/jeany/
Depends On Me
CGHbase , GeneTraffic , OLIN , RMAGEML , SIM , arrayQualityMetrics , arrayQuality , cghMCR , convert , maigesPack , nnNorm , stepNorm
Imports Me
Suggests Me
Agi4x44PreProcess , Mfuzz , hexbin , limma , maSigPro
Development History Bioconductor Changelog