globaltest

Testing Association of Groups of Genes with a Clinical Variable

Testing whether sets of genes (e.g. KEGG pathways of GO terms) are significantly associated with a clinical variable of interest.

Author Jelle Goeman and Jan Oosting
Maintainer Jelle Goeman

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("globaltest")

Documentation

Package Downloads
GlobalTest
Reference Manual
Package source globaltest_4.12.0.tar.gz
Windows binary globaltest_4.12.0.zip
MacOS X 10.4 (Tiger) binary globaltest_4.12.0.tgz
MacOS X 10.5 (Leopard) binary globaltest_4.12.0.tgz
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Details

biocViews
Microarray , OneChannel , Statistics , DifferentialExpression , GO , Pathways
Depends
methods
Imports
Biobase , survival , AnnotationDbi , annotate , multtest , graphics
Suggests
vsn , golubEsets , KEGG.db , hu6800.db , GOstats , Rgraphviz , GO.db
System Requirements
License GPL version 2 or newer
URL http://www.msbi.nl/goeman
Depends On Me
GlobalAncova , SIM
Imports Me
Suggests Me
Development History Bioconductor Changelog