affycoretools

Functions useful for those doing repetitive analyses with Affymetrix GeneChips.

Various wrapper functions that have been written to streamline the more common analyses that a core Biostatistician might see.

Author James W. MacDonald
Maintainer James W. MacDonald

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("affycoretools")

Documentation

Package Downloads
affycoretools Overview
affycoretools biomaRt Integration
Reference Manual
Package source affycoretools_1.14.1.tar.gz
Windows binary affycoretools_1.14.1.zip
MacOS X 10.4 (Tiger) binary affycoretools_1.14.1.tgz
MacOS X 10.5 (Leopard) binary affycoretools_1.14.1.tgz
Package Downloads Report Downloads Stats

Details

biocViews
ReportWriting , Microarray , OneChannel , Preprocessing
Depends
affy , limma , GOstats , biomaRt , gcrma , Biobase , annotate , xtable , annaffy , AnnotationDbi
Imports
Suggests
affydata , hgfocuscdf
System Requirements
License Artistic
URL
Depends On Me
Imports Me
Suggests Me
Agi4x44PreProcess
Development History Bioconductor Changelog