VanillaICE

Methods for fitting Hidden Markov Models to SNP chip data

Hidden Markov Models for characterizing chromosomal alterations in high throughput SNP arrays

Author Robert Scharpf , Kevin Scharpf, and Ingo Ruczinski
Maintainer Robert Scharpf

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("VanillaICE")

Documentation

Package Downloads
IlluminaHowTo Vignette
VanillaICE Vignette
Reference Manual
Package source VanillaICE_1.4.0.tar.gz
Windows binary VanillaICE_1.4.0.zip
MacOS X 10.4 (Tiger) binary VanillaICE_1.4.0.tgz
MacOS X 10.5 (Leopard) binary VanillaICE_1.4.0.tgz
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Details

biocViews
Statistics , DNACopyNumber , SNPsAndGeneticVariability , Visualization
Depends
R , SNPchip , oligoClasses , Biobase , methods
Imports
Suggests
RColorBrewer , genefilter , RSQLite
System Requirements
License LGPL-2
URL http://www.biostat.jhsph.edu/~rscharpf/software/index.html
Depends On Me
Imports Me
Suggests Me
SNPchip
Development History Bioconductor Changelog