SAGx

Statistical Analysis of the GeneChip

A package for retrieval, preparation and analysis of data from the Affymetrix GeneChip. In particular the issue of identifying differentially expressed genes is addressed.

Author	Per Broberg
Maintainer	Per Broberg,

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("SAGx")

Documentation

Package Downloads

samroc - example

Reference Manual

Package source	SAGx_1.16.0.tar.gz
Windows binary	SAGx_1.16.0.zip
MacOS X 10.4 (Tiger) binary	SAGx_1.16.0.tgz
MacOS X 10.5 (Leopard) binary	SAGx_1.16.0.tgz
Package Downloads Report	Downloads Stats

Details

biocViews	Microarray , OneChannel , Preprocessing , DataImport , Statistics , DifferentialExpression , Clustering , MultipleComparisons
Depends	R , stats , multtest , methods
Imports	Biobase
Suggests	KEGG.db , hu6800.db
System Requirements
License	LGPL
URL	http://home.swipnet.se/pibroberg/expression_hemsida1.html
Depends On Me
Imports Me
Suggests Me
Development History	Bioconductor Changelog