| Package | Maintainer | Title |
|---|---|---|
| aCGH | Jane Fridlyand | Classes and functions for Array Comparative Genomic Hybridization data. |
| apComplex | Denise Scholtens | Estimate protein complex membership using AP-MS protein data |
| Biostrings | H. Pages | String objects representing biological sequences, and matching algorithms |
| BSgenome | H. Pages | Infrastructure for Biostrings-based genome data packages |
| cellHTS | Ligia Bras | Analysis of cell-based screens |
| cellHTS2 | Florian Hahne | Analysis of cell-based screens - revised version of cellHTS |
| fbat | The R Genetics Project | Family Based Association Tests for genetic data. |
| flowCore | Nolwenn Le Meur | flowCore: Basic structures for flow cytometry data |
| flowQ | N. Le Meur | Qualitiy control for flow cytometry |
| flowUtils | Nishant Gopalakrishnan | Utilities for flow cytometry |
| flowViz | Florian Hahne | Visualization for flow cytometry |
| GeneR | Y. d'Aubenton-Carafa | R for genes and sequences analysis |
| GeneRfold | Antoine Lucas | R for genes and sequences, using viennaRNA package (fold) |
| GeneticsBase | The R Genetics Project | Classes and functions for handling genetic data |
| GeneticsDesign | The R Genetics Project | Functions for designing genetics studies |
| GeneticsPed | The R Genetics Project | Pedigree and genetic relationship functions |
| GEOquery | Sean Davis | Get data from NCBI Gene Expression Omnibus (GEO) |
| GGBase | Vince Carey | infrastructure for genetics of gene expression (c) 2008 VJ Carey |
| GGtools | Vince Carey | software and data for genetical genomics (c) 2006 VJ Carey |
| IRanges | Biocore Team c/o BioC user list | Low-level containers for storing sets of integer ranges |
| LPEadj | Carl Murie | A correction of the local pooled error (LPE) method to replace the asymptotic variance adjustment with an unbiased adjustment based on sample size. |
| MassSpecWavelet | Pan Du | Mass spectrum processing by wavelet-based algorithms |
| PCpheno | Nolwenn Le Meur | Phenotypes and cellular organizational units |
| plgem | Mattia Pelizzola | Power Law Global Error Model |
| PLPE | Soo-heang Eo | Local Pooled Error Test for Differential Expression with Paired High-throughput Data |
| ppiStats | Tony Chiang | Protein-Protein Interaction Statistical Package |
| prada | Florian Hahne | Data analysis for cell-based functional assays |
| PROcess | Xiaochun Li | Ciphergen SELDI-TOF Processing |
| Rdisop | Steffen Neumann | Decomposition of Isotopic Patterns |
| rflowcyt | N. LeMeur | Statistical tools and data structures for analytic flow cytometry |
| Rintact | Tony Chiang | Interface to EBI Intact protein interaction data base |
| RNAither | Nora Rieber | Statistical analysis of high-throughput RNAi screens |
| RpsiXML | Jitao David Zhang | R interface to PSI-MI 2.5 files |
| RSNPper | VJ Carey | interface to chip.org::SNPper for SNP-related data |
| Ruuid | Biocore Team c/o BioC user list | Ruuid: Provides Universally Unique ID values |
| SAGElyzer | Jianhua Zhang | A package that deals with SAGE libraries |
| sagenhaft | Tim Beissbarth | Collection of functions for reading and comparing SAGE libraries |
| ScISI | Tony Chiang | In Silico Interactome |
| simulatorAPMS | Tony Chiang | Computationally simulates the AP-MS technology. |
| SLGI | Nolwenn Le Meur | Synthetic Lethal Genetic Interaction |
| xcms | Colin A. Smith | LC/MS and GC/MS Data Analysis |