simpleaffy
Very simple high level analysis of Affymetrix data
Provides high level functions for reading Affy .CEL files,
phenotypic data, and then computing simple things with it, such
as t-tests, fold changes and the like. Makes heavy use of the
affy library. Also has some basic scatter plot functions and
mechanisms for generating high resolution journal figures...
| Author |
Crispin J Miller |
| Maintainer |
Crispin Miller |
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("simpleaffy")
Vignettes (Documentation)
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Package Downloads
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Details
| biocViews |
Microarray
,
OneChannel
,
QualityControl
,
Preprocessing
,
Transcription
,
DataImport
,
Statistics
,
DifferentialExpression
,
Annotation
,
ReportWriting
,
Visualization
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| Depends |
R, affy, genefilter, Biobase, methods, utils, gcrma |
| Suggests |
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| Imports |
methods, utils |
| SystemRequirements |
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| License |
GPL version 2 or later |
| URL |
http://www.bioconductor.org,
http://bioinformatics.picr.man.ac.uk/simpleaffy/
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| dependsOnMe |
affyQCReport, arrayQualityMetrics, exonmap, yaqcaffy |
| suggestsMe |
AffyExpress |