rtracklayer
R interface to genome browsers and their annotation tracks
Extensible framework for interacting with multiple genome
browsers (currently UCSC and Argo built-in) and manipulating
annotation tracks in various formats (currently GFF, BED and
WIG built-in). The user may export/import tracks to/from the
supported browsers, as well as query and modify the browser
state, such as the current viewport.
| Author |
Michael Lawrence |
| Maintainer |
Michael Lawrence |
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("rtracklayer")
Vignettes (Documentation)
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Package Downloads
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Details
| biocViews |
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| Depends |
R, Biobase, methods, RCurl |
| Suggests |
Biostrings |
| Imports |
XML, rJava |
| SystemRequirements |
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| License |
Artistic-2.0 |
| URL |
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| dependsOnMe |
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| suggestsMe |
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